Single Cell Analysis Portal (SCAP)

Joel P. Howard, Gael Cagnone, Florian Wünnemann
Last updated on Jun 4, 2021
Github repo Docker container

The Single Cell Analysis Portal (SCAP) is an Rshiny dashboard to visualize and annotate single-cell data in anndata format interactively. The app has been developed mainly with cloud usage inside the GenAP platform in mind, but can also be used locally via R or using the Docker containers we provide on Dockerhub.

Simply use the following commands to pull and run the container locally:

Dev container

docker pull singlecellacademy/scap:dev
docker run -it -p 3838:3838 -v my_folder_with_h5ad_files:/ftp singlecellacademy/scap:dev
single-cell RShiny SCAP visualization

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